---
title: "Palmer Penguins"
output: 
  flexdashboard::flex_dashboard:
    orientation: columns
    vertical_layout: fill
    source_code: embed
    css: my-custom-rules.scss
    theme:
      version: 4
      bg: "#fff"
      fg: "#000" 
      primary: "#ED79F9"
      navbar-bg: "#3ADAC6"
      base_font: 
        google: DM Mono
      heading_font:
        google: Sen
---

```{r setup, include=FALSE}
#library(flexdashboard)
library(palmerpenguins)
library(tidyverse)
knitr::opts_chunk$set(echo = FALSE)
```


# Page 1


## Column {data-width="450"}

This is a [purple]{.my-purple} word.

### Flipper length by species

```{r}
# Histogram example: flipper length by species
ggplot(data = penguins, aes(x = flipper_length_mm)) +
  geom_histogram(aes(fill = species), alpha = 0.5, position = "identity") +
  scale_fill_manual(values = c("darkorange","darkorchid","cyan4"))
```

### Species by island

```{r}
ggplot(penguins, aes(x = island, fill = species)) +
  geom_bar(alpha = 0.8) +
  scale_fill_manual(values = c("darkorange","purple","cyan4"),
                    guide = FALSE) +
  theme_minimal() +
  facet_wrap(~species, ncol = 1) +
  coord_flip()
```

## Column {data-width="350"} {.tabset}

### Bill length by depth

```{r}
bill_no_species <- ggplot(data = penguins,
                         aes(x = bill_length_mm,
                             y = bill_depth_mm)) +
  geom_point() +
  theme_minimal() +
  scale_color_manual(values = c("darkorange","purple","cyan4")) +
  labs(title = "Penguin bill dimensions (omit species)",
       subtitle = "Palmer Station LTER",
       x = "Bill length (mm)",
       y = "Bill depth (mm)") +
  theme(plot.title.position = "plot",
        plot.caption = element_text(hjust = 0, face= "italic"),
        plot.caption.position = "plot") +
  geom_smooth(method = "lm", se = FALSE, color = "gray50")

bill_no_species
```

### Simpson's Paradox

```{r}
bill_len_dep <- ggplot(data = penguins,
                         aes(x = bill_length_mm,
                             y = bill_depth_mm,
                             group = species)) +
  geom_point(aes(color = species,
                 shape = species),
             size = 3,
             alpha = 0.8) +
  geom_smooth(method = "lm", se = FALSE, aes(color = species)) +
  theme_minimal() +
  scale_color_manual(values = c("darkorange","purple","cyan4")) +
  labs(title = "Penguin bill dimensions",
       subtitle = "Bill length and depth for Adelie, Chinstrap and Gentoo Penguins at Palmer Station LTER",
       x = "Bill length (mm)",
       y = "Bill depth (mm)",
       color = "Penguin species",
       shape = "Penguin species") +
  theme(legend.position = c(0.85, 0.15),
        legend.background = element_rect(fill = "white", color = NA),
        plot.title.position = "plot",
        plot.caption = element_text(hjust = 0, face= "italic"),
        plot.caption.position = "plot")

bill_len_dep
```

## Column {data-width="200"}

```{r}
knitr::include_graphics("penguins.png")
```

###

Hi hello


# Page 2